PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19933.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 313aa    MW: 34347 Da    PI: 6.5108
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19933.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.85.3e-5091501128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                   +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++             +  ++e+yfFs +d+ky++g+r+nrat++g+Wkat
  MLOC_19933.1   9 VPPGFRFHPTEEELVGYYLARKVSSHKIDL-DIIQEVDLYRIEPWDLQErcgkyggggggGQEDPTTEYYFFSYKDRKYPSGTRTNRATAAGFWKAT 104
                   69****************************.99**************9557777666543222244499**************************** PP

           NAM  87 gkdkevlskkgel....vglkktLvfykgrapkgektdWvmheyrl 128
                   g+dk+vls++++     +g++ktLvfy+grap+g+ktdW++heyrl
  MLOC_19933.1 105 GRDKPVLSSSSSSpaavIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 150
                   ********843334555***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-548171IPR003441NAC domain
PROSITE profilePS5100554.8859171IPR003441NAC domain
PfamPF023651.9E-2510150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEESSCNTVP PGFRFHPTEE ELVGYYLARK VSSHKIDLDI IQEVDLYRIE PWDLQERCGK  60
YGGGGGGGQE DPTTEYYFFS YKDRKYPSGT RTNRATAAGF WKATGRDKPV LSSSSSSPAA  120
VIGMRKTLVF YRGRAPNGRK TDWIIHEYRL QSNEHAPTQE EGWVVCRAFV KPVPNQQHRM  180
SYGGGGYPTM NGSYSSASNY YYYDNPNARL MVAGGGPPHD QHVLAAESKQ QVQLFSADMP  240
PPLQSPTFDG EGEGDISQIS GGCSSADQQL AAAAGTIDWN LWNSLLPSTA PQLFHGQPMT  300
PPPAANSSSS KNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-45317110168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755377.11e-130PREDICTED: uncharacterized protein LOC100838301 isoform X2
SwissprotQ9C8W92e-83NAC30_ARATH; NAC domain-containing protein 30
TrEMBLM0V7W90.0M0V7W9_HORVD; Uncharacterized protein
STRINGMLOC_19933.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.13e-82vascular related NAC-domain protein 7